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Department of Virology, Erasmus Medical Center, Rotterdam, The Netherlands
Correspondence
Ron A. M. Fouchier
r.fouchier{at}erasmusmc.nl
| ABSTRACT |
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Published online ahead of print on 24 April 2008 as DOI 10.1099/vir.0.2008/002022-0.
| INTRODUCTION |
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A variety of vaccination strategies may be required to prevent HMPV respiratory tract infections in different risk groups, such as young children, individuals with underlying disease and the elderly. Several vaccination strategies have been explored since the discovery of HMPV (Herfst & Fouchier, 2008
), including subunit vaccines (Cseke et al., 2007
; Herfst et al., 2007
), a T-cell epitope vaccine (Herd et al., 2006
), live-attenuated vaccines (LAVs) (Biacchesi et al., 2005
; Pham et al., 2005
; Tang et al., 2005
) and formalin-inactivated (FI) HMPV (de Swart et al., 2007
; Hamelin et al., 2007
; Yim et al., 2007
). Immunization with FI-HMPV primed for hypersensitivity responses upon challenge infection (de Swart et al., 2007
; Hamelin et al., 2007
; Yim et al., 2007
), suggesting that classical inactivated vaccines for HMPV may predispose for enhanced disease when used in immunologically naïve recipients, similar to what was previously described for HRSV and measles virus (Fulginiti et al., 1967
; Kim et al., 1969
; Polack, 2007
). For LAVs, no enhanced disease has been observed in studies performed in naïve animals with HRSV or HMPV. In addition, live-attenuated measles virus vaccines have not been associated with vaccine-mediated enhanced disease, either in humans or in animal models. LAVs may be useful to prime or boost HMPV-specific immune responses, since such viruses have the advantage of mimicking a natural infection, and thus could provide protection against subsequent infections without inducing enhanced disease. Recently developed reverse genetics systems for HMPV (Biacchesi et al., 2004
; Herfst et al., 2004
) facilitate the modification of viral genomes and thus provide a powerful tool to design LAVs. Several LAVs for HMPV have recently been described, including HMPV deletion mutants, chimeric viruses based on HMPV and avian metapneumovirus, and a human/bovine parainfluenza virus type 3 (H/BPIV3) expressing the F protein of HMPV (Biacchesi et al., 2005
; Pham et al., 2005
; Tang et al., 2005
). Here, classical methods of virus adaptation to replication at low temperatures (cold-passage, cp) were used to attenuate HMPV, and the associated sequence changes in the viral genome were identified. Recombinant viruses containing HMPV or HRSV cp-mutations were generated by reverse genetics. These recombinant viruses were found to be temperature-sensitive (ts) in vitro, attenuated for replication in hamsters, yet highly immunogenic in this animal model. Hamsters immunized with ts-HMPV strains were protected against heterologous virus infection in the lower respiratory tract (LRT), and had significantly reduced virus titres in the upper respiratory tract (URT). Thus, cp/ts-HMPV strains represent promising LAV candidates to protect against HMPV infections.
| METHODS |
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Cold-passaging of virus.
HMPV isolate NL/1/99 (van den Hoogen et al., 2004
) (lineage B, passage 3 at 37 °C) was serially passaged in Vero-83 cells at decreasing temperatures. Virus was cultured at 34, 31, 28 and 25 °C for 3, 3, 2 and 2 passages, respectively. When the temperature was decreased further to 22 or 20 °C, virus replication was impaired too much, and passaging was thus continued at 25 °C until passage 35 was reached. Cultures were harvested from every passage approximately 7 days post-inoculation and stored in 25 % sucrose at –80 °C.
Sequence analysis.
Viral RNA was isolated from virus stocks of cp-NL/1/99 passage 35, and intermediate passages 14, 23 and 29, using the High Pure RNA Isolation kit (Roche Diagnostics) according to the instructions from the manufacturer. RNA was subsequently used in RT-PCR assays using primer sets designed on the basis of the full-length genome sequence of NL/1/99 (GenBank accession no. AY525843
[GenBank]
). Both strands of the overlapping PCR fragments were sequenced without prior cloning, to minimize amplification and sequencing errors. The nucleotide sequence of the cp-NL/1/99 genome was compared with the genome of the wild-type (wt) virus to identify nucleotide substitutions. All primer sequences are available upon request.
Sequence comparison of cp-HRSV and cp-HMPV.
Genome sequences of HRSV strains containing mutations responsible for temperature sensitivity in vitro and attenuation in vivo (Firestone et al., 1996
; Juhasz et al., 1997
, 1999
; Whitehead et al., 1999
) were aligned with the full-length sequence of HMPV NL/1/99 using BioEdit software (Hall, 1999
). Regions containing known ts-mutations in the HRSV genome were compared with their counterparts of HMPV, to determine whether HRSV ts-mutations could be introduced in homologous sites, conserved in the HMPV genome.
Recombinant viruses.
The construction of wt recombinant HMPV NL/1/00 and NL/1/99 (genetic lineage A and B, respectively) has been described previously (Herfst et al., 2004
). Mutations that were found in cp-NL/1/99, or identified upon sequence comparison of ts-HRSV and HMPV, were generated in the context of NL/1/99 using the QuikChange multi site-directed mutagenesis kit (Stratagene) according to the instructions of the manufacturer. All primer sequences used for mutagenesis are available upon request.
Virus growth at different temperatures.
To generate virus growth curves, 25 cm2 flasks containing confluent Vero-118 cells were inoculated at 37 °C for 2 h with wt or mutant HMPV at an m.o.i. of 0.1. After adsorption of the virus to the cells, the inoculum was removed and cells were washed twice with medium before addition of 7 ml fresh medium, and incubation at 32, 37, 38, 39 or 40 °C. Every day, 0.5 ml of the supernatant was collected and replaced by fresh medium. To determine viral titres, supernatants were subjected to plaque assays as described previously (Herfst et al., 2004
), with the exception that cells were incubated at 32 °C. Wild-type NL/1/99 virus and the viruses containing cp-HMPV mutations were incubated for 6 days, whereas the virus harbouring the cp-HRSV mutations was incubated for 8 days, since only very small plaques were observed after 6 days.
Hamster experiments.
The replication kinetics and immunogenicity of the recombinant candidate LAVs were studied in Syrian golden hamsters (Mesocricetus auratus; Charles River). Groups of 12 female hamsters, 5–7 week old, were inoculated intranasally with 106 TCID50 of NL/1/99 or LAV in a 100 µl volume. Four days post-infection (p.i.), lungs and nasal turbinates (NT) were collected from six animals per group, snap-frozen immediately and stored at –80 °C until further processing. From the other animals, blood samples were collected by orbital puncture at 21 days p.i. Blood samples were stored overnight at room temperature and centrifuged for 15 min at 1200 g; serum was collected and stored at –20 °C.
For the immunization and challenge experiment, animals were immunized by virus inoculation as described above, with 106 TCID50 of LAV or NL/1/99, or PBS as control. At 21 days p.i., animals were challenged intranasally with 107 TCID50 of NL/1/00 virus. Four days after heterologous challenge infection, lungs, NT and blood samples were collected for further processing.
All intranasal inoculations, orbital punctures and euthanasia were performed under anaesthesia with inhaled isoflurane. All animal studies were approved by an independent Animal Ethics Committee and the Dutch authority for working with genetically modified organisms, and were carried out in accordance with animal experimentation guidelines.
Plaque reduction virus-neutralization (PRVN) assay.
Virus-neutralizing (VN) antibody titres were determined in serum samples by a PRVN assay as described previously (de Graaf et al., 2007
). In brief, serum samples were diluted and incubated for 60 min at 37 °C with approximately 50 p.f.u. of NL/1/00 or NL/1/99, expressing the enhanced green fluorescent protein. Subsequently, the virus–serum mixtures were added to Vero-118 cells in 24-well plates and incubated at 37 °C. After 2 h, the supernatants were replaced by a mixture of equal amounts of infection medium and 2 % methyl cellulose. Six days later, fluorescent plaques were counted using a Typhoon 9410 Variable Mode Imager (GE Healthcare). VN antibody titres were expressed as the dilution resulting in 50 % reduction of the number of plaques, calculated according to the method of Reed & Muench (1938)
. Per assay, each serum was tested in duplicate against HMPV NL/1/00 and NL/1/99.
Virus titrations.
Tissues from the inoculated hamsters were homogenized using a polytron homogenizer (Kinematica AG) in infection medium. After removal of tissue debris by centrifugation, supernatants were used for virus titration in Vero-118 cells. Titrations were performed with 10-fold serial dilutions in 96-well plates (Greiner Bio-One). Confluent monolayers of Vero-118 cells were spin-inoculated (15 min, 2000 g) with 100 µl 10-fold serial dilutions of each sample and incubated at 37 °C. Two hours after the spin-inoculation, the inoculum was replaced with fresh infection medium. After 3–4 days, 100 µl fresh infection medium was added to each well. Seven days after inoculation, infected wells were identified by immunofluorescence assays with HMPV-specific polyclonal antiserum raised in guinea pigs, as described previously (van den Hoogen et al., 2001
). Titres expressed as TCID50 were calculated as described by Reed & Muench (1938)
. Titres were calculated per gram tissue, with a detection limit of 101.6 and 101.2 TCID50 per gram of tissue for the NT and lungs, respectively.
| RESULTS |
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Upon introduction of the four cp-HRSV mutations in the NL/1/99 backbone, no virus could be recovered even after three attempts. Therefore, four viruses containing each possible combination of three mutations were generated, thus omitting one of the mutations (Table 2
). Only the virus in which the L1321 mutation was omitted (named HMPVHRSV3 hereafter) could be rescued.
Temperature-sensitivity
To study the possible ts-phenotype of recombinant viruses, virus growth curves were generated in Vero cells at 32, 37, 38, 39 or 40 °C. Plaque assays were performed to determine the viral titres in the supernatants of samples that were collected daily. Wild-type HMPV was able to replicate at all temperatures, with the highest virus titre obtained at 37 °C. At 40 °C, the virus titre was reduced more than 100-fold compared with the optimal temperature of 37 °C (Fig. 1a
). HMPVM8, which was an intermediate virus in the cloning procedure of HMPVM19, also replicated at all temperatures, but with higher titres as compared with the wt HMPV, and an optimal replication temperature of 32 °C (Fig. 1b
). Even at 40 °C, HMPVM8 displayed faster replication kinetics in Vero cells and at all temperatures higher peak virus titres were reached compared with wt HMPV. Mutant HMPVM11 also displayed optimal virus growth at a temperature of 32 °C. Peak titres were reached later for HMPVM11, but virus titres at 6 days p.i. at 32 °C were higher as compared with HMPVM8 (Fig. 1c
). This virus did not replicate at 39 or 40 °C, indicating that this virus was ts. The only differences between HMPVM11 and HMPVM8 were two mutations in the L gene and one mutation in the P gene (Table 1
). HMPVM9, that was also generated as a cloning intermediate, containing all mutations of HMPVM8 and the mutation in the P gene, turned out to be insensitive to higher temperatures (data not shown). Therefore, HMPVM2 was constructed containing only two L mutations (nt 7826 and 8090, Table 1
) as compared with wt NL/1/99. The replication kinetics of HMPVM2 was most similar to that of the wt NL/1/99 virus (compare Fig. 1a
and 1d
), suggesting that these two L mutations alone are not ts- or Vero-cell adaptive mutations.
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Replication kinetics and immunogenicity in hamsters
For the two viruses with a ts-phenotype in vitro, HMPVM11 and HMPVHRSV3, we tested the level of attenuation in hamsters. Syrian golden hamsters were inoculated with 106 TCID50 HMPVM11, HMPVHRSV3 or wt NL/1/99 (12 animals per group), after which virus titres in the lungs and NT were compared at 4 days p.i. (six animals per group), and VN antibody titres were determined at 21 days p.i. (six animals per group). In the NT of animals inoculated with wt HMPV, virus titres up to 107 TCID50 (g NT)–1 were detected (Fig. 2a
). In the animals inoculated with each of the candidate LAVs, however, mean virus titres ranged from 102 to 104 TCID50 (g NT)–1, indicating that virus replication was reduced by approximately 10 000-fold in the URT. In the lungs of animals inoculated with wt HMPV, the mean virus titre was 102.2 TCID50 (g lung)–1, while in the animals inoculated with HMPVM11 or HMPVHRSV3 virus titres were below the detection limit of 101.2 TCID50, with the exception of a single animal in the HMPVM11-inoculated group (101.3 TCID50). Thus, both ts viruses appeared to be highly attenuated in vivo and virus replication was restricted to the URT, where virus titres were reduced by approximately 10 000-fold compared with wt HMPV.
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| DISCUSSION |
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Initial attempts to rescue a recombinant virus with all 19 mutations detected by passage 35 failed repeatedly. The parental virus at passage 35 replicated very slowly and to low virus titres. It is possible that the consensus sequence generated on the basis of the virus at passage 35 was derived from a variety of quasispecies in the culture supernatant, which were replication deficient upon clonal passage. Since HMPV generally replicates poorly in in vitro cell cultures, which was even more severe for the virus at passage 35, plaque purification of this virus was not attempted. Rather, we next tested whether viruses with a subset of the mutations of the virus at passage 35 could be rescued. A virus with 11 of the 19 mutations, HMPVM11, on line turned out to have a ts-phenotype in vitro (Fig. 1c
). Ten of these 11 mutations were non-silent and were located in the P, M, F, M2, G and L genes. To our knowledge, none of these mutations has been observed in cp/ts-HRSV. A recombinant virus with eight of the 11 cp-mutations, HMPVM8, did not display a ts-phenotype in vitro. The only differences between HMPVM11 and HMPVM8 were two mutations in the L gene (nt 7826 and 8090) and one mutation in the P gene (nt 1458, Table 1
). HMPVM9, which contained all the mutations of HMPVM8 and the mutation in the P gene, was not ts. Also, a recombinant virus that contained only the two mutations in the L gene did not display a ts-phenotype. Therefore, it seems likely that one or both of the L mutations in combination with one or more other mutations is responsible for the ts-phenotype of HMPVM11. Further studies are needed to map the phenotype of all cp-mutations, and especially the phenotype of HMPV harbouring all three mutations that are different between HMPVM8 and HMPVM11 should be evaluated.
For HRSV, this classical approach of generating attenuated cp-viruses has resulted in several candidate LAVs that have been tested extensively in animal models and even in human volunteers. Sequence comparison of HMPV with different cp-HRSV strains resulted in the identification of four cp-HRSV mutations that could be introduced into the HMPV genome. When three of these mutations were introduced into the HMPV genome, omitting the L1321 mutation (Table 2
), virus could be rescued (HMPVHRSV3). Upon introduction of the HRSV L1321 mutation in the HMPV genome, recombinant HMPV could not be rescued. It is possible that the introduction of L1321 mutation in HMPV yields a stronger ts-phenotype if other, potentially compensatory, mutations are present. Virus replication curves generated at different temperatures revealed that HMPVHRSV3 was restricted to replication at 39 and 40 °C, indicating that this virus had a ts-phenotype (Fig. 1e
). The L521 phenylalanine (Phe) to leucine mutation, present in HMPVHRSV3, has previously been mutagenized at the analogous Phe at amino acid position 456 of recombinant HPIV3 (Skiadopoulos et al., 1999
). This amino acid substitution resulted in a virus bearing a ts phenotype with virus replication reduced by 10-fold in the URT, but not the LRT of hamsters. Substitution of this amino acid in two cp-HPIV3 candidates (rcp45 and rcp45L) induced a 100- to 1000-fold more restricted replication in hamsters than their cp parents (Skiadopoulos et al., 1999
).
Both HMPVM11 and HMPVHRSV3 were found to be attenuated in hamsters, with approximately 10 000-fold reduction of virus replication in the URT, and no detectable virus in the LRT as compared with wt virus (Fig. 2
). In immunized animals, the HMPV-specific antibody titres were slightly lower as compared with animals inoculated with wt virus (Figs 3
and 5
). Nevertheless, immunized animals were completely protected from HMPV LRT infection, and virus titres in the URT were reduced to the same extent as seen in hamsters exposed to wt HMPV (Fig. 4
). Viral titres in both the lungs and NT of PBS-immunized animals that were challenged with NL/1/00 were approximately 100-fold higher than the titres obtained in NL/1/99-infected animals (Fig. 2
). Similar differences in replication between these two viruses have been observed before in cynomolgus macaques (van den Hoogen et al., 2007
), but may also be caused by differences in inoculum size, 106 versus 107 for NL/1/99 and NL/1/00, respectively.
Altogether, it seems that the balance between the level of attenuation and the level of induction of specific immune responses for both HMPVM11 and HMPVHRSV3 in hamsters is appropriate for these viruses to serve as vaccines. The results of this study justify subsequent studies in non-human primates, in which the attenuation, stability, immunogenicity and safety issues can be addressed further.
Future studies should determine the contribution to the ts-phenotype of each individual mutation that was introduced in HMPVM11 and HMPVHRSV3. During passaging at lower temperatures, both ts-mutations, mutations associated with adaptation to Vero cells, and mutations without apparent phenotype changes may be observed, and it would be good to discriminate amongst these. The S101P and E93K mutations in the F protein may be good examples of cell culture adaptation mutations. When the mutations responsible for the attenuated phenotype have been defined, amino acid point mutations should be generated using codons that differ from the wt codon by preferably 2 or 3 nt, in order to reduce the frequency of reversion.
In addition to the use of LAVs for the induction of protective immunity against the attenuated virus itself, attenuated candidate HMPV may be used as a vector to induce immunity against a second or even a third viral respiratory pathogen, such as HRSV or HPIV3. A similar approach has already been conducted with a chimeric H/BPIV3 expressing the F protein of HMPV that induced protective immunity against both HMPV and HPIV3 infection in African green monkeys (Tang et al., 2005
).
Our results demonstrate that immunization of Syrian golden hamsters with attenuated recombinant viruses containing cp-HMPV or cp-HRSV mutations induced a good antibody response, and provided complete protection against LRT infection with a heterologous strain of HMPV. The high degree of attenuation and the high level of immunogenicity suggest that HMPVM11 and HMPVHRSV3 represent excellent candidate LAVs for further exploration to prime the HMPV-specific immune response in non-human primates, and perhaps humans.
| ACKNOWLEDGEMENTS |
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Received 12 March 2008;
accepted 10 April 2008.
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